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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4718476_4719764_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4718476 - 4719764
Intron Length:
1289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CGTCCTGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
TGTGTTTCAAGG
Flanking Amino Acid:
GMQNLNSSRQIPSGNLGMFG
Intron Amino Acid Position:
1241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
71
0.47
0.9
65
36.3
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
45.3
-0.4
1.9
51.21
43.7

Associated Gene:

Gene:
TNRC6C
Ensembl Gene ID:
ENSAPLG00000005456
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005667
4702793 - 4757735
54943