About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4719939_4726690_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4719939 - 4726690
Intron Length:
6752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
GCACTGCACACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTGCAC
U12 Branch Point Sequence:
GGGCACTGCACA
Flanking Amino Acid:
SMDRPTFLDKLTLSFSNQDG
Intron Amino Acid Position:
1183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
47.5
-0.1
1.3
57
39.5
Major PPT
57.5
0.17
1
49.6
38.3
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
41.9
-0.6
2
48.79
40.8

Associated Gene:

Gene:
TNRC6C
Ensembl Gene ID:
ENSAPLG00000005456
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005667
4702793 - 4757735
54943