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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4730074_4738184_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4730074 - 4738184
Intron Length:
8111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCGCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTCTTCTTCCCT
Flanking Amino Acid:
QPNRSPLLGPAGWGEMPNVH
Intron Amino Acid Position:
962

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
72.2
0.5
0.8
68.4
31.9
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
41.8
-0.5
3.6
70.32
47.1

Associated Gene:

Gene:
TNRC6C
Ensembl Gene ID:
ENSAPLG00000005456
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005667
4702793 - 4757735
54943