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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4740778_4757288_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4740778 - 4757288
Intron Length:
16511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CGGATCCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCATTTTCAACC
Flanking Amino Acid:
GQHHPSKTQADLSHSGLGDH
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
70.8
0.47
1
65.8
40.8
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
60.2
0.3
1.5
66.67
39.2

Associated Gene:

Gene:
TNRC6C
Ensembl Gene ID:
ENSAPLG00000005456
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005667
4702793 - 4757735
54943