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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_484764_487012_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
484764 - 487012
Intron Length:
2249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TCTGTCTTGCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTTTGTACAT
Flanking Amino Acid:
GPKDEDNDYIDWSCQSATKN
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
0.9
74.8
29.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
63.7
0.31
1.2
63.7
42
Minor 5ss
31.5
-2.1
2.7
34.9
36
Minor BPS
47.9
-0
2.3
75.95
41.3

Associated Gene:

Gene:
SCO1
Ensembl Gene ID:
ENSAPLG00000027233
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032713
484607 - 493801
9195