Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_487129_487241_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

487129 - 487241

Intron Length:

113

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACCGTTT

5'SS Class:

major

3'SS Sequence:

TCTTTCTCCGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

AGTTTCTAAACA

Flanking Amino Acid:

NEEAIARYVKEFSSKLIGLT

Intron Amino Acid Position:

549

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.6

0.46

1.2

70.6

42.2

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

80.8

0.69

0.7

77.4

24.6

Minor 5ss

47.1

-0.3

3.4

73.3

43.6

Minor BPS

65.9

0.5

1.6

74.09

37.5

Associated Gene:

Gene:

SCO1

Ensembl Gene ID:

ENSAPLG00000027233

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041234

482220 - 496367

14148

ENSAPLT00000036718

483048 - 497218

14171

ENSAPLT00000032713

484607 - 493801

9195