Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_488475_492301_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

488475 - 492301

Intron Length:

3827

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTGAGTGTT

5'SS Class:

major

3'SS Sequence:

TTGTTTTCTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTCAA

U12 Branch Point Sequence:

AATTCAAGATCT

Flanking Amino Acid:

MKKMKKTKEEKLEKERNRGI

Intron Amino Acid Position:

452

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

35.2

Major BPS

74.2

0.6

0.9

75.7

Major PPT

84.8

0.78

0.7

81.6

30.4

Minor 5ss

34.4

-1.8

3.4

45.6

43.6

Minor BPS

44.3

-0.3

2.1

67.54

42.1

Associated Gene:

Gene:

SCO1

Ensembl Gene ID:

ENSAPLG00000027233

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032713

484607 - 493801

9195

ENSAPLT00000041234

482220 - 496367

14148

ENSAPLT00000036718

483048 - 497218

14171