About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_492393_492538_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
492393 - 492538
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCAGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
TTTTTTTCAGTA
Flanking Amino Acid:
SGQRAAPQRRLVSWRSLVAT
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
63.1
43.4
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
83.7
0.76
0.8
82.7
27.5
Minor 5ss
26.2
-2.7
2.9
22.9
37.3
Minor BPS
54.8
0.15
1.7
70.75
36.1

Associated Gene:

Gene:
SCO1
Ensembl Gene ID:
ENSAPLG00000027233
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041234
482220 - 496367
14148
ENSAPLT00000036718
483048 - 497218
14171
ENSAPLT00000032713
484607 - 493801
9195