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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_493371_493816_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
493371 - 493816
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAGGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTTCTTCATT
Flanking Amino Acid:
NPNENLNSPAGLKEPQFVEF
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.9
79.7
31.2
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.5
0.82
0.7
81.5
28.8
Minor 5ss
23.8
-3
3.9
35.8
41
Minor BPS
66.4
0.6
1.7
82.74
39.5

Associated Gene:

Gene:
ADPRM
Ensembl Gene ID:
ENSAPLG00000017438
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046865
492806 - 495695
2890