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Intron Name: Anas_platyrhynchos_platyrhynchos_19_493901_495511_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

493901 - 495511

Intron Length:

1611

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTATG

5'SS Class:

strong_major

3'SS Sequence:

TGGTTTTCATCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACCCAT

U12 Branch Point Sequence:

ATAGCTACAACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.2

1.02

0.7

86.9

30.1

Major BPS

64.5

0.36

1.2

72.7

34.4

Major PPT

75.2

0.57

74.7

Minor 5ss

33.9

-1.8

2.8

41.5

45.1

Minor BPS

48.2

-0

1.9

68.59

Associated Gene:

Gene:

SCO1

Ensembl Gene ID:

ENSAPLG00000027233

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036718

483048 - 497218

14171

ENSAPLT00000041234

482220 - 496367

14148