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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_496368_497576_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
496368 - 497576
Intron Length:
1209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTGCTTCATT
Flanking Amino Acid:
QGNILHEEEGRNPLGGIHLT
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.5
35.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.7
0.6
0.8
74.5
35
Minor 5ss
43.5
-0.7
2.6
60.2
44.3
Minor BPS
58.7
0.35
2.2
81.92
40.2

Associated Gene:

Gene:
TMEM220
Ensembl Gene ID:
ENSAPLG00000025111
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031670
496235 - 500878
4644