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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_497701_499630_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
497701 - 499630
Intron Length:
1930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAACTAT
U12 Branch Point Sequence:
TATGCTGCAGTT
Flanking Amino Acid:
LLVGLNPSVTENAVWRSLCD
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
70.7
35.5
Major BPS
48.2
-0.1
1.2
44.9
37.7
Major PPT
92.5
0.96
0.6
92.6
17.3
Minor 5ss
43.8
-0.7
3.3
63.6
48.1
Minor BPS
40.8
-0.6
2.3
60.76
43.7

Associated Gene:

Gene:
TMEM220
Ensembl Gene ID:
ENSAPLG00000025111
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031670
496235 - 500878
4644