Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_499692_500791_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

499692 - 500791

Intron Length:

1100

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGCA

5'SS Class:

strong_major

3'SS Sequence:

GTTTCATTAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAT

U12 Branch Point Sequence:

GTTTCATTAACA

Flanking Amino Acid:

TFFGLAAAVQVIYLVPAALT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.82

0.9

71.8

33.2

Major BPS

82.2

0.8

1.1

85.7

34.9

Major PPT

75.5

0.57

70.4

39.1

Minor 5ss

24.1

-3

3.2

29.7

43.3

Minor BPS

78.2

0.88

1.5

85.92

32.4

Associated Gene:

Gene:

TMEM220

Ensembl Gene ID:

ENSAPLG00000025111

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031670

496235 - 500878

4644