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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5000261_5002096_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5000261 - 5002096
Intron Length:
1836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCCTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
GAATCTTCACGT
Flanking Amino Acid:
LEERDYFKQRITADLLANGI
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
69.6
42.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
74
0.54
0.8
64.8
30.7
Minor 5ss
31.2
-2.2
3.1
31.4
42.6
Minor BPS
44.4
-0.3
2
58.92
44

Associated Gene:

Gene:
SEPTIN9
Ensembl Gene ID:
ENSAPLG00000008619
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008998
4997477 - 5042560
45084