Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_51098_51259_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

51098 - 51259

Intron Length:

162

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTT|GTAAGGCTC

5'SS Class:

major

3'SS Sequence:

CCGTTCCCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAC

U12 Branch Point Sequence:

CTTTCTTTAACC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.7

0.46

1.1

62.5

41.9

Major BPS

80.9

0.77

0.8

81.7

25.4

Major PPT

71.4

0.48

0.8

64.7

Minor 5ss

37.9

-1.4

3.5

56.9

41.9

Minor BPS

84.6

1.06

85.93

32.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013659

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014366

51075 - 87160

36086