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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5146650_5149236_R

Intron Information:

Intron Rank:
2
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
5146650 - 5149236
Intron Length:
2587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTTTGCTTA
5'SS Class:
weak_minor
3'SS Sequence:
CTAAATCTGTAAG|A
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCAACCTAAATC
Flanking Amino Acid:
TMVMVKGIVLLPHCVMREIL
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.2
0.03
1.2
54.5
38.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
52.8
0.06
1.2
56.8
43.1
Minor 5ss
58.6
0.29
2.3
71.4
39.9
Minor BPS
56.7
0.19
1.7
63.67
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001621
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001611
5146424 - 5150046
3623