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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5149589_5150003_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5149589 - 5150003
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTTAATGAT
5'SS Class:
weak_major
3'SS Sequence:
CTCTTGTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTTAATTACAT
Flanking Amino Acid:
CLILLFPHPHSGIVEQSPLV
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.7
0.13
1.2
61.5
36.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
81.7
0.71
0.8
80.2
31.9
Minor 5ss
32.6
-2
3.3
47.4
42.6
Minor BPS
47.8
-0
2.1
72.72
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001621
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001611
5146424 - 5150046
3623