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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5380520_5395453_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5380520 - 5395453
Intron Length:
14934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TTTGTCTTTACA
Flanking Amino Acid:
GSNKTIEPRTGRVSFFTSGS
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
89.5
0.89
0.7
84
31
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
66.2
0.5
1.7
78.67
37.8

Associated Gene:

Gene:
OGFOD3
Ensembl Gene ID:
ENSAPLG00000008478
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037532
5380383 - 5424783
44401
ENSAPLT00000033082
5380383 - 5426233
45851
ENSAPLT00000008810
5380383 - 5424546
44164