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Intron Name: Anas_platyrhynchos_platyrhynchos_19_5425540_5425654_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5425540 - 5425654

Intron Length:

115

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCGGG

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTGCCGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTTCAC

U12 Branch Point Sequence:

GCCGCCTTCACC

Flanking Amino Acid:

PLVQSFGHMEFVLKHKEFAH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

63.1

43.4

Major BPS

65.1

0.38

1.1

68.9

36.5

Major PPT

81.5

0.71

0.8

77.1

31.6

Minor 5ss

30.3

-2.3

3.3

37.8

47.1

Minor BPS

51.6

0.03

1.9

58.41

46.7

Associated Gene:

Gene:

HEXD

Ensembl Gene ID:

ENSAPLG00000008436

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029842

5424708 - 5432843

8136

ENSAPLT00000008780

5424708 - 5432843

8136