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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5427413_5428778_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5427413 - 5428778
Intron Length:
1366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTGTGACCA
5'SS Class:
weak_major
3'SS Sequence:
GTTCATTTCAGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTATTTAGAATA
Flanking Amino Acid:
RGISEETLAGSGVPQLVQPM
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.4
0.13
1.1
46.9
36.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
56.1
0.14
1.7
64.3
41.2
Minor 5ss
34.9
-1.7
3
40.7
45.1
Minor BPS
49.9
-0
1.6
65.53
34.7

Associated Gene:

Gene:
HEXD
Ensembl Gene ID:
ENSAPLG00000008436
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008780
5424708 - 5432843
8136