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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5428853_5429275_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5428853 - 5429275
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTACTTCTC
5'SS Class:
weak_major
3'SS Sequence:
CATATCTGATAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
AAAAACATATCT
Flanking Amino Acid:
AADLDVESKGFVLLCLISVL
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56
0.14
1.2
54.8
42.3
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
52.9
0.07
1.2
57.5
42
Minor 5ss
40.4
-1.1
3.3
58.9
39.9
Minor BPS
43.7
-0.4
2
60.12
42.1

Associated Gene:

Gene:
HEXD
Ensembl Gene ID:
ENSAPLG00000008436
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029842
5424708 - 5432843
8136