Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5431594_5432115_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5431594 - 5432115

Intron Length:

522

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAAGG

5'SS Class:

strong_major

3'SS Sequence:

CATCCATTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAC

U12 Branch Point Sequence:

GTTTCAAAAACT

Flanking Amino Acid:

SSVDELLERNRYVTGWFSPY

Intron Amino Acid Position:

388

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

68.8

42.1

Major BPS

84.6

0.86

0.8

83.9

22.3

Major PPT

77.5

0.62

0.9

73.5

35.6

Minor 5ss

32.2

-2

40.4

45.3

Minor BPS

50.7

0.1

2.2

79.33

Associated Gene:

Gene:

HEXD

Ensembl Gene ID:

ENSAPLG00000008436

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029842

5424708 - 5432843

8136

ENSAPLT00000008780

5424708 - 5432843

8136