About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5438997_5439691_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5438997 - 5439691
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CATCTGTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATCT
Flanking Amino Acid:
LTLSKGGNEQVVAQLHEIRD
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78.8
0.65
0.9
71.8
37.8
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
66.4
0.59
1.8
87.9
37.5

Associated Gene:

Gene:
CYBC1
Ensembl Gene ID:
ENSAPLG00000008407
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008751
5438848 - 5442976
4129