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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5453612_5455296_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5453612 - 5455296
Intron Length:
1685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTGTTTACCA
Flanking Amino Acid:
ELFRILNLNKKCDTSKHKVL
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
71.1
35.5
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
83.7
0.76
0.9
78
40.1
Minor 5ss
36.7
-1.5
3.1
47.8
47.6
Minor BPS
61.5
0.36
2
78.6
38.6

Associated Gene:

Gene:
NARF
Ensembl Gene ID:
ENSAPLG00000007817
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008138
5453468 - 5466766
13299