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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5455430_5456676_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5455430 - 5456676
Intron Length:
1247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTCCTTACTA
Flanking Amino Acid:
RRLCGFLKSLGVHYVFDTTI
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
79.1
37.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
77.1
0.61
0.9
72.7
37.3
Minor 5ss
44.3
-0.6
2.8
59.1
45.3
Minor BPS
78.5
0.89
1.5
87.11
31.6

Associated Gene:

Gene:
NARF
Ensembl Gene ID:
ENSAPLG00000007817
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008138
5453468 - 5466766
13299