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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5461059_5461925_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5461059 - 5461925
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCGTTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TGGAGTTCACAT
Flanking Amino Acid:
LVKGYFARQQNLSPDKIFHV
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
87.2
29.5
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
73.2
0.52
1
67.8
37.6
Minor 5ss
36.3
-1.5
3
50.7
45.8
Minor BPS
37.5
-0.8
2
50.62
43.3

Associated Gene:

Gene:
NARF
Ensembl Gene ID:
ENSAPLG00000007817
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008138
5453468 - 5466766
13299