About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_546876_558822_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
546876 - 558822
Intron Length:
11947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGGCTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTTCACAACT
Flanking Amino Acid:
TSGVPFQNPHIDIQATLGSN
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
85.2
25.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
63.6
0.31
1.1
63.5
37.3
Minor 5ss
36.3
-1.6
2.9
46.9
41.8
Minor BPS
61.5
0.44
1.8
83.68
36.7

Associated Gene:

Gene:
MAP2K4
Ensembl Gene ID:
ENSAPLG00000013074
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013644
546724 - 608862
62139