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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_546876_564834_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
546876 - 564834
Intron Length:
17959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATATTTTTGACA
Flanking Amino Acid:
TSGVPFQNPHIERLRTHSIE
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
85.2
25.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
76.1
0.59
1
72.9
41.5
Minor 5ss
36.3
-1.6
2.9
46.9
41.8
Minor BPS
68.5
0.58
1.1
72.46
32.8

Associated Gene:

Gene:
MAP2K4
Ensembl Gene ID:
ENSAPLG00000013074
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039429
546724 - 608442
61719