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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5501755_5535464_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5501755 - 5535464
Intron Length:
33710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TTTCATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTTCATT
Flanking Amino Acid:
RGAPPLQLPRVCTFRFPSTN
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
69.7
36.3
Major BPS
100
1.24
0.5
100
0
Major PPT
90.2
0.91
0.7
88.4
28.3
Minor 5ss
32.6
-2
2.7
35.6
40.5
Minor BPS
60.5
0.41
1.7
78.42
39.1

Associated Gene:

Gene:
FOXK2
Ensembl Gene ID:
ENSAPLG00000007723
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008021
5500613 - 5547251
46639