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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5538578_5539028_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5538578 - 5539028
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTGACC
Flanking Amino Acid:
KEASGGDSPKDDSKPPYSYA
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.7
0.87
0.6
85.5
21.8
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
66.2
0.49
1.6
76.89
32.4

Associated Gene:

Gene:
FOXK2
Ensembl Gene ID:
ENSAPLG00000007723
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008021
5500613 - 5547251
46639