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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5544550_5544794_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5544550 - 5544794
Intron Length:
245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACC
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTGTCTTTACCA
Flanking Amino Acid:
QENGDHKEVKVKVEPIPAIS
Intron Amino Acid Position:
767

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
77.7
30.1
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
83.5
0.75
0.8
80.7
36.3
Minor 5ss
29.3
-2.4
2.8
35.3
40.9
Minor BPS
70.5
0.64
1.6
78.71
38.4

Associated Gene:

Gene:
FOXK2
Ensembl Gene ID:
ENSAPLG00000007723
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008021
5500613 - 5547251
46639