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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5545005_5547054_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5545005 - 5547054
Intron Length:
2050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TTTCTATTATCT
Flanking Amino Acid:
TTAIQGQGNAAAASPLHMLA
Intron Amino Acid Position:
837

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
85.3
31.1
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
89.1
0.88
0.7
84.5
29.9
Minor 5ss
47.9
-0.2
2.5
65.4
40.1
Minor BPS
59
0.36
1.9
82.47
38.4

Associated Gene:

Gene:
FOXK2
Ensembl Gene ID:
ENSAPLG00000007723
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008021
5500613 - 5547251
46639