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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5557796_5559618_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5557796 - 5559618
Intron Length:
1823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
ATTCCTTCTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TAATTCCTAATA
Flanking Amino Acid:
GTRIATASEKGTLIRIFDTS
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
83.6
27.5
Major BPS
79
0.72
1
78.4
31.2
Major PPT
70.9
0.47
1
68.5
37
Minor 5ss
38.8
-1.3
3.1
49.9
40.5
Minor BPS
61
0.34
1.6
69.99
35.9

Associated Gene:

Gene:
WDR45B
Ensembl Gene ID:
ENSAPLG00000007533
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007847
5555577 - 5571257
15681