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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5559810_5561242_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5559810 - 5561242
Intron Length:
1433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACGGAA
U12 Branch Point Sequence:
CTGCAGTTACTT
Flanking Amino Acid:
HVFETCYNPKGLCVLCPNSN
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1.1
77.3
37.8
Major BPS
49.7
-0
1.3
49.3
38
Major PPT
86.8
0.83
0.7
85.5
29.2
Minor 5ss
30.8
-2.2
3.1
41.8
44.7
Minor BPS
41.2
-0.5
2.3
57.62
45.6

Associated Gene:

Gene:
WDR45B
Ensembl Gene ID:
ENSAPLG00000007533
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007847
5555577 - 5571257
15681