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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5561965_5562633_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5561965 - 5562633
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGCCG
5'SS Class:
major
3'SS Sequence:
TGCACTGTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TATGCCTTGATG
Flanking Amino Acid:
GKKPKYPPNKVMIWDDLKKK
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.2
50.9
45.5
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
71
0.47
1
61.1
44.5
Minor 5ss
30.1
-2.3
3.4
39.9
45.6
Minor BPS
66.2
0.36
1.5
67.15
41

Associated Gene:

Gene:
WDR45B
Ensembl Gene ID:
ENSAPLG00000007533
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007847
5555577 - 5571257
15681