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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5562736_5565696_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5562736 - 5565696
Intron Length:
2961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TCTTCAATAAAA
Flanking Amino Acid:
ADPLKEKEKQEFLEGGVGHV
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
83.1
0.75
0.9
74.1
41
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
53.7
0.11
2
71.19
40.3

Associated Gene:

Gene:
WDR45B
Ensembl Gene ID:
ENSAPLG00000007533
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007847
5555577 - 5571257
15681