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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5575019_5575506_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5575019 - 5575506
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
IDRWIKEIDEHAPGVPKILV
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.1
30.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.1
0.79
0.7
84.2
23.8
Minor 5ss
37
-1.5
3.3
49.2
47.3
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
RAB40B
Ensembl Gene ID:
ENSAPLG00000027488
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022607
5574098 - 5595834
21737