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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5576417_5577766_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5576417 - 5577766
Intron Length:
1350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GTATTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATATTTTAAAT
Flanking Amino Acid:
LDGRRIKLQLWDTSGQGRFC
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.5
0.73
0.8
81.4
36.1
Minor 5ss
44.9
-0.6
3.2
63.2
43.8
Minor BPS
65.7
0.57
1.4
78.88
36.8

Associated Gene:

Gene:
RAB40B
Ensembl Gene ID:
ENSAPLG00000027488
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022607
5574098 - 5595834
21737