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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5604895_5605583_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5604895 - 5605583
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TGTTGCTAAAAA
Flanking Amino Acid:
MEHLEMRGLNRHSAKLGTQL
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
85
0.79
0.7
84.8
30
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
51
0.03
2.2
69.33
42.7

Associated Gene:

Gene:
FN3KRP
Ensembl Gene ID:
ENSAPLG00000011833
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012314
5602437 - 5607854
5418