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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5606760_5607515_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5606760 - 5607515
Intron Length:
756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAGAA
5'SS Class:
major
3'SS Sequence:
TTTTCCCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATTGATA
Flanking Amino Acid:
EARELWAQLQLKIPSLFCDV
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
64.6
35.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
87.4
0.84
0.6
82
22.8
Minor 5ss
27.7
-2.6
3.6
37.3
47.4
Minor BPS
66.7
0.52
1.6
76.41
34.1

Associated Gene:

Gene:
FN3KRP
Ensembl Gene ID:
ENSAPLG00000011833
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012314
5602437 - 5607854
5418