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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5615862_5617058_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5615862 - 5617058
Intron Length:
1197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTGTTTCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CTTTTTTCAGTT
Flanking Amino Acid:
MEYLKMKHLNKYSSKLGKQI
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
83.3
29.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
85.1
0.79
0.7
80.9
31.3
Minor 5ss
63.8
0.47
2.2
75.6
33.8
Minor BPS
50.5
0.09
1.7
71.05
41

Associated Gene:

Gene:
FN3K
Ensembl Gene ID:
ENSAPLG00000011664
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012148
5614504 - 5620098
5595