About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5617151_5617941_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5617151 - 5617941
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGAGTAT
5'SS Class:
major
3'SS Sequence:
TTATGTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTGTGTTTATTA
Flanking Amino Acid:
DKLRKEGNTVGKGASHSEFQ
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.6
0.34
1.1
61.6
39.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
78.1
0.63
0.8
77.3
36.7
Minor 5ss
36.5
-1.5
3.7
51.3
47.8
Minor BPS
51
0.03
2
66.28
41.4

Associated Gene:

Gene:
FN3K
Ensembl Gene ID:
ENSAPLG00000011664
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012148
5614504 - 5620098
5595