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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5618025_5618889_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5618025 - 5618889
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TCATATTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATAAACC
Flanking Amino Acid:
VATCCGYIPQVNEWQSDWPS
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.6
31.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
77.2
0.61
0.9
69.6
41.1
Minor 5ss
47.6
-0.2
2.4
62.3
42.5
Minor BPS
56.7
0.19
1.9
72.02
38.9

Associated Gene:

Gene:
FN3K
Ensembl Gene ID:
ENSAPLG00000011664
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012148
5614504 - 5620098
5595