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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5619013_5619759_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5619013 - 5619759
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGAACC
5'SS Class:
major
3'SS Sequence:
CTTGCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AGCTCTTTAATT
Flanking Amino Acid:
EARELWSQLKIKIPEMFHDV
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
68
35.2
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
83.9
0.76
0.8
80.8
31.2
Minor 5ss
42.5
-0.8
2.8
53.8
37
Minor BPS
73.4
0.81
1.2
78.72
38

Associated Gene:

Gene:
FN3K
Ensembl Gene ID:
ENSAPLG00000011664
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012148
5614504 - 5620098
5595