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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5623402_5626349_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5623402 - 5626349
Intron Length:
2948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCACG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TGGTCATAGATG
Flanking Amino Acid:
ARETAVEKFIVIMDKYQEQP
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.4
40.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
34.3
-1.8
2.8
40.4
45.5
Minor BPS
45.8
-0.4
2
51.98
43

Associated Gene:

Gene:
TBCD
Ensembl Gene ID:
ENSAPLG00000010791
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011355
5623209 - 5728310
105102