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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5626401_5626596_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5626401 - 5626596
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAC
U12 Branch Point Sequence:
TCTCCTTTCATT
Flanking Amino Acid:
EQPHLLDRHLEWMMNLLLDI
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
62.4
0.31
1.2
72.4
34.6
Major PPT
73.4
0.53
0.8
74
29.6
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
60
0.4
1.7
76.64
40.8

Associated Gene:

Gene:
TBCD
Ensembl Gene ID:
ENSAPLG00000010791
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011355
5623209 - 5728310
105102