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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5627834_5628993_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5627834 - 5628993
Intron Length:
1160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAA
U12 Branch Point Sequence:
TTTTGTTTGACT
Flanking Amino Acid:
LMDQNPKDCETWETRYMLLL
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
77.7
30.1
Major BPS
64.9
0.37
1
61
37.5
Major PPT
91.2
0.93
0.6
84.1
30.8
Minor 5ss
29.3
-2.4
2.8
35.3
40.9
Minor BPS
72
0.77
1.7
90.81
33.2

Associated Gene:

Gene:
TBCD
Ensembl Gene ID:
ENSAPLG00000010791
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011355
5623209 - 5728310
105102