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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5630017_5633803_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5630017 - 5633803
Intron Length:
3787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
TTTTCTGTGACA
Flanking Amino Acid:
ARDAAAVLVSKFIVRPDVRQ
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
79
0.65
1
76
38
Minor 5ss
40.5
-1.1
3
54
37
Minor BPS
65.4
0.48
2
81.99
33.2

Associated Gene:

Gene:
TBCD
Ensembl Gene ID:
ENSAPLG00000010791
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011355
5623209 - 5728310
105102