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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5642228_5644805_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5642228 - 5644805
Intron Length:
2578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGTCTTGACA
Flanking Amino Acid:
HGKREDCLPYAGTVLECLDN
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
80.5
34.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.2
0.88
0.7
83.7
31.3
Minor 5ss
44
-0.7
2.8
55.1
43.4
Minor BPS
74.3
0.76
1.3
81.71
33.5

Associated Gene:

Gene:
TBCD
Ensembl Gene ID:
ENSAPLG00000010791
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011355
5623209 - 5728310
105102