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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5646315_5647128_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5646315 - 5647128
Intron Length:
814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGTGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CATTTATCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTATCT
Flanking Amino Acid:
DIPGEIENVVEQLLVGLKDK
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
78
26.5
Major BPS
100
1.24
0.5
100
0
Major PPT
80.3
0.68
0.8
74.1
35.2
Minor 5ss
40.2
-1.1
2.7
48.5
47.7
Minor BPS
60.8
0.42
1.8
82.49
38.6

Associated Gene:

Gene:
TBCD
Ensembl Gene ID:
ENSAPLG00000010791
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011355
5623209 - 5728310
105102